Beta Roughness Model

This tutorial describes how to incorporate the general roughness model for crystal truncation rod data after Robinson [ROB86].

To use this roughness model you will need the following:

1. Data file that includes L-value of nearest Bragg peak (LB) and distance in reciprocal lattice units between adjacent Bragg peaks (dL) for each data point. If dL is the same for all Bragg peaks on a given rod, you may use the same LB for all.

   # Sample data file with Bragg peak position and spacing
   # H       K       L       I       Ierr    LB      dL
   0 0       1.0     0       0       3       3
   0 0       1.1     0       0       3       3
   0 0       1.2     0       0       3       3
   0 0       1.3     0       0       3       3
   0 0       1.4     0       0       3       3
   0 0       1.5     0       0       3       3
   0 0       1.6     0       0       3       3
   

2. SXRD model script modified to include the beta parameter as a user variable, and roughness in the structure factor calculation. Add/replace the following code in the model script shown at Surface X-diffraction tutorial

   # 3.a Define beta for roughness model
   rgh=UserVars()
   rgh.new_var('beta', 0.0)
   
   
   # 9 Define the Sim function
   def Sim(data):
      I = []
      beta = rgh.beta
      #9.a loop through the data sets
      for data_set in data:
         # 9.b create all the h,k,l,LB,dL values for the rod (data_set)
         h = data_set.extra_data['h']
         k = data_set.extra_data['k']
         l = data_set.x
         LB = data_set.extra_data['LB']
         dL = data_set.extra_data['dL']
         # 9.c. calculate roughness using beta model
         rough = (1-beta)/((1-beta)**2 + 4*beta*np.sin(np.pi*(l - LB)/dL)**2)**0.5
         # 9.d. Calculate the structure factor
         f = rough*sample.calc_f(h, k, l)
         # 9.e Calculate |F|
         i = abs(f)**2
         # 9.f Append the calculated intensity to the list I
         I.append(i)
      return I
   

3. In your parameter grid, select an empty row, right click, and select UserVars‣rgh.setBeta

References

ROB86

ROBINSON, I., 1986. CRYSTAL TRUNCATION RODS AND SURFACE-ROUGHNESS. Physical Review B 33, 3830-3836.